Search results for "Chemical reaction"

showing 10 items of 196 documents

Theoretical insights in enzyme catalysis

2004

In this tutorial review we show how the methods and techniques of computational chemistry have been applied to the understanding of the physical basis of the rate enhancement of chemical reactions by enzymes. This is to answer the question: Why is the activation free energy in enzyme catalysed reactions smaller than the activation free energy observed in solution? Two important points of view are presented: Transition State (TS) theories and Michaelis Complex (MC) theories. After reviewing some of the most popular computational methods employed, we analyse two particular enzymatic reactions: the conversion of chorismate to prephenate catalysed by Bacillus subtilis chorismate mutase, and a m…

Models MolecularChemical PhenomenaStereochemistryCatechol O-MethyltransferaseChemical reactionCatalysisCatalysisEnzyme catalysisComputational chemistrychemistry.chemical_classificationbiologyChemistry PhysicalSubstrate (chemistry)Active siteGeneral ChemistryGeneral MedicineEnzymesSolutionsEnzymeModels Chemicalchemistrybiology.proteinChorismate mutaseThermodynamicsBacillus subtilisChorismate Mutase
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2016

Abstract. Gaseous formaldehyde (HCHO) is an important precursor of OH radicals and a key intermediate molecule in the oxidation of atmospheric volatile organic compounds (VOCs). Budget analyses reveal large discrepancies between modeled and observed HCHO concentrations in the atmosphere. Here, we investigate the interactions of gaseous HCHO with soil surfaces through coated-wall flow tube experiments applying atmospherically relevant HCHO concentrations of  ∼  10 to 40 ppbv. For the determination of uptake coefficients (γ), we provide a Matlab code to account for the diffusion correction under laminar flow conditions. Under dry conditions (relative humidity  =  0 %), an initial γ of (1.1 ± …

Atmospheric Science010504 meteorology & atmospheric sciencesChemistryRadicalDrop (liquid)Inorganic chemistry010501 environmental sciences01 natural sciencesChemical reactionTrace gasAdsorptionDesorptionMoleculeRelative humidity0105 earth and related environmental sciencesAtmospheric Chemistry and Physics
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Presenilin is the molecular target of acidic γ-secretase modulators in living cells.

2012

The intramembrane-cleaving protease γ-secretase catalyzes the last step in the generation of toxic amyloid-β (Aβ) peptides and is a principal therapeutic target in Alzheimer's disease. Both preclinical and clinical studies have demonstrated that inhibition of γ-secretase is associated with prohibitive side effects due to suppression of Notch processing and signaling. Potentially safer are γ-secretase modulators (GSMs), which are small molecules that selectively lower generation of the highly amyloidogenic Aβ42 peptides but spare Notch processing. GSMs with nanomolar potency and favorable pharmacological properties have been described, but the molecular mechanism of GSMs remains uncertain an…

CellsProtein subunitDrug Evaluation PreclinicalNotch signaling pathwaylcsh:MedicineCHO CellsBiochemistryModels BiologicalPresenilinInhibitory Concentration 50CricetulusCricetinaeAmyloid precursor proteinAnimalsHumansMolecular Targeted TherapyEnzyme InhibitorsMode of actionlcsh:ScienceBiologyCells CulturedMultidisciplinarybiologyEnzyme ClassesChemistryAnti-Inflammatory Agents Non-SteroidalHEK 293 cellslcsh:RChemical ReactionsPresenilinsProteinsSmall moleculeEnzymesChemistryHEK293 CellsNeurologyBiochemistrybiology.proteinMedicineDementialcsh:QAmyloid Precursor Protein SecretasesAmyloid precursor protein secretaseResearch ArticlePLoS ONE
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Importance of the liquid to solid weight ratio in the powdered solid-liquid reactions Example drawn from cement constituent hydration

1997

Abstract It seems justified to wonder if the chemical processes which have been evidenced from diluted stirred suspensions are or are not in accordance with those involved in a stagnant paste. The present paper is aimed at clarifying this question which is in connection with the problem of the so called ‘dormant period’ or ‘induction period’ at the beginning of the hydration of Portland cement.

CementChemistryInduction periodMineralogyGeneral ChemistryCondensed Matter PhysicsSuspension (chemistry)law.inventionPortland cementChemical reaction kineticsChemical engineeringlawSpecific surface areaGeneral Materials ScienceSolid liquidSolid State Ionics
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Formation of slow molecules in chemical reactions in crossed molecular beams

2008

T. V. Tscherbul, Ğ Barinovs, J. Klos, and R. V. Krems Department of Chemistry, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z1 Department of Theoretical Physics, Institute of Chemical Physics, University of Latvia, Riga, Latvia Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, USA Received 13 January 2008; revised manuscript received 29 May 2008; published 8 August 2008

PhysicsNuclear physicsChemical energyMoleculeAtomic physicsChemical reactionAtomic and Molecular Physics and OpticsPhysical Review A
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Molecular Diversity Required for the Formation of Autocatalytic Sets

2019

Systems chemistry deals with the design and study of complex chemical systems. However, such systems are often difficult to investigate experimentally. We provide an example of how theoretical and simulation-based studies can provide useful insights into the properties and dynamics of complex chemical systems, in particular of autocatalytic sets. We investigate the issue of the required molecular diversity for autocatalytic sets to exist in random polymer libraries. Given a fixed probability that an arbitrary polymer catalyzes the formation of other polymers, we calculate this required molecular diversity theoretically for two particular models of chemical reaction systems, and then verify …

0301 basic medicinechemistry.chemical_classificationRandom graphPaleontologyPolymerChemical reactionGeneral Biochemistry Genetics and Molecular BiologyArticleorigin of lifeAutocatalysis03 medical and health sciences030104 developmental biology0302 clinical medicinechemistrySpace and Planetary ScienceAbiogenesisautocatalytic setslcsh:QStatistical physicslcsh:Sciencesystems chemistry030217 neurology & neurosurgeryEcology Evolution Behavior and Systematicsrandom graphsDiversity (business)Life
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2011

Abstract. The ability of coated mineral dust particles to act as ice nuclei (IN) was investigated at LACIS (Leipzig Aerosol Cloud Interaction Simulator) during the FROST1- and FROST2-campaigns (Freezing of dust). Sulphuric acid was condensed on the particles which afterwards were optionally humidified, treated with ammonia vapour and/or heat. By means of aerosol mass spectrometry we found evidence that processing of mineral dust particles with sulphuric acid leads to surface modifications of the particles. These surface modifications are most likely responsible for the observed reduction of the IN activation of the particles. The observed particle mass spectra suggest that different treatme…

Atmospheric ScienceChemistryLead (sea ice)Mineral dustAtmospheric sciencescomplex mixturesChemical reactionrespiratory tract diseasesAmmoniachemistry.chemical_compoundChemical engineeringIce nucleusAerosol mass spectrometrySurface modificationParticleAtmospheric Chemistry and Physics
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Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens

2019

25 Páginas, 7 figuras, 2 tablas

RNA virusesRotavirusViral DiseasesPhysiologyViral Nonstructural ProteinsPathology and Laboratory MedicineCrystallography X-Raymedicine.disease_causeBiochemistryBinding AnalysisReovirusesImmune PhysiologyRotavirusMedicine and Health SciencesChemical PrecipitationBiology (General)Antigens ViralGastroenterologiachemistry.chemical_classification0303 health sciencesImmune System ProteinsCrystallographyMolecular StructurebiologyPhysics030302 biochemistry & molecular biologyChemical ReactionsRNA-Binding ProteinsCondensed Matter PhysicsLigand (biochemistry)Amino acidChemistryInfectious DiseasesMedical MicrobiologyViral PathogensVirusesPhysical SciencesCrystal StructurePathogensCrystallizationResearch ArticleChemical ElementsGlycanQH301-705.5Virus RNAViral proteinImmunologyResearch and Analysis MethodsMicrobiologyABO Blood-Group SystemCell Line03 medical and health sciencesAntigenVirologyGeneticsmedicineSolid State PhysicsHumansAntigensBinding siteMicrobial PathogensMolecular BiologyRotavirus InfectionChemical Characterization030304 developmental biologyChemical PhysicsBinding SitesBiology and life sciencesMutagenesisOrganismsProteinsRC581-607Molecular biologyCarbonchemistrybiology.proteinCapsid ProteinsParasitologyImmunologic diseases. AllergyPLOS Pathogens
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The kinetics of anionic polymerization of styrene in 1,2-dimethoxiethane

2007

Kinetic measurements in a flow apparatus in combination with conductance measurements, permit the determination of the two equilibrium constants Kes and Kdiss* and the three propagation rate constants k(±)c, k(±)s and k(−) as a function of temperature. The great differences in the polymerization rate in various solvents are mainly caused by their influence on the equilibrium constants. The influence of the solvent on the rate constants is not greater than in other chemical reactions.

Solventchemistry.chemical_compoundAnionic addition polymerizationReaction rate constantPolymerizationChemistryKineticsPolymer chemistryGeneral EngineeringPhysical chemistryChemical reactionEquilibrium constantStyreneJournal of Polymer Science: Polymer Symposia
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Some observations on the spectrophotometric determination of nitrite using ergonovine-p-dimethylaminobenzaldehyde

1991

Abstract The system ergonovine maleate-p-diethylaminobenzaldehyde in sulfuric acid media is applied to the kinetic-spectrophotometric determination of nitrite ions with competitive precision. The reaction rate is strongly enhanced by the presence of nitrite or ferric ions, being the nitrite in the “promoting” role of the reaction. Linear calibration plots are obtained for nitrite concentration ranges 0.3–2.4 ppm or 0.66–6 ppb. The influence of foreign compounds is also established.

medicine.diagnostic_testChemistryAlkaloidInorganic chemistrySulfuric acidChemical reactionAnalytical ChemistryReaction ratechemistry.chemical_compoundSpectrophotometrymedicineFerricErgonovineNitriteSpectroscopymedicine.drugNuclear chemistryMicrochemical Journal
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